Does snakemake have any known vulnerabilities?

No known CVE vulnerabilities were found for snakemake v9.16.2 in the brin database.

What capabilities does snakemake have?

snakemake has the following detected capabilities: network access, filesystem access, process spawning, environment variable access, native modules. Review these before using with AI coding agents.

Can I use snakemake safely with AI coding agents?

snakemake has been flagged with risk indicators. Review the detected threats and capabilities before using with AI coding agents. Assessments are automated and may contain errors.

snakemake

Q: Is snakemake safe to use?

snakemake v9.16.2 has warnings detected in the latest brin safety scan. Trust score: 85/100. Review the flagged concerns before use. This is an automated assessment.

PyPI

Is snakemake safe to use?

The latest brin safety scan flagged snakemake v9.16.2 with risk indicators that warrant review. No known CVE vulnerabilities. Trust score: 85/100. Review the findings below before use. This is an automated assessment and may contain errors.

Install (safety-checked)

snakemake Has Warnings

Warnings detected due to potential concerns

warning

CVEs

Threats

Install Scripts

Risk Indicators

•Package includes native code modules
•Package can spawn child processes

brin Recommendations

→This package has warnings detected. Evaluate the specific concerns before proceeding.

Install with brin add snakemake to automatically apply these checks before installation.

This is an automated, point-in-time assessment and may contain errors. Findings are risk indicators, not confirmed threats. Security posture may change over time. Maintainers can dispute findings via the brin review process.

snakemake Capabilities & Permissions

What snakemake can access when installed. Review these capabilities before using with AI agents like Cursor, Claude Code, or Codex.

Network Access

This package makes network requests.

127.0.0.1blogs.msdn.microsoft.comcdn.tailwindcss.comcdnjs.cloudflare.comconda-forge.orgdevelopers.google.comdocs.python.orgesprima.orgexample.comgist.github.com+17 more

Protocols: http, https

Filesystem Access

Reads and writes to the filesystem.

setup.py (rw).env (rw).env (rw).env (rw)/home/ (rw)/tmp/ (rw).env (rw)/usr/ (rw)+34 more

Process Spawning

This package can spawn child processes.

rmsh

Environment Variables

Accesses the following environment variables.

APPTAINER_CACHEDIRAZ_BATCH_ACCOUNT_URLCONTAINER_IMAGEGITHUB_TOKENGITLAB_TOKENLOCATION_ENVVARPATHPYTHONPATHSNAKEMAKE_CONDA_PREFIXSNAKEMAKE_OUTPUT_CACHE+6 more

Native Modules

Contains native code that runs outside the JavaScript sandbox.

native extensionnumpypandas

AGENTS.md for snakemake

Good instructions lead to good results. brin adds snakemake documentation to your AGENTS.md so your agent knows how to use it properly—improving both safety and performance.

brin init

Vercel's research: 100% accuracy with AGENTS.md vs 53% without →

snakemake Documentation & Source Code

For the full snakemake README, API documentation, and source code, visit the official package registry.

View on PyPI

Frequently asked questions about snakemake safety

Install (safety-checked)

Weekly Downloads

30.7K

Version

9.16.2

Other Versions

9.16.3

Last Scanned

Feb 4, 2026

Trust Score

85/100·Legitimacy signals, not safety

Capabilities

Network

Connects to: 127.0.0.1, blogs.msdn.microsoft.com, cdn.tailwindcss.com...

Filesystem

Reads & Writes files

Process

Spawns child processes

Environment

Accesses: APPTAINER_CACHEDIR, AZ_BATCH_ACCOUNT_URL, CONTAINER_IMAGE...

Native

Contains native modules